Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator nrdr | BJD13_RS12950 | Not Available | Negative | 2528083 - 2528607 | 19931.8 |
| serine hydroxymethyltransferase | BJD13_RS12955 | Not Available | Negative | 2528710 - 2529963 | 44999.7 |
| rcnb family protein | BJD13_RS12960 | Not Available | Negative | 2530161 - 2530658 | 20127.3 |
| energy-dependent translational throttle protein etta | BJD13_RS12965 | Not Available | Positive | 2530882 - 2532543 | 61736.6 |
| hypothetical protein | BJD13_RS12970 | Not Available | Positive | 2532731 - 2533069 | 12288.4 |
| s-formylglutathione hydrolase | BJD13_RS12975 | Not Available | Negative | 2533237 - 2534067 | 30042.2 |
| s-(hydroxymethyl)glutathione synthase | BJD13_RS12980 | Not Available | Negative | 2534126 - 2534701 | 20536.3 |
| s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase | BJD13_RS12985 | Not Available | Negative | 2534770 - 2535879 | 39028.2 |
| metal/formaldehyde-sensitive transcriptional repressor | BJD13_RS12990 | Not Available | Negative | 2535946 - 2536221 | 9979.09 |
| hypothetical protein | BJD13_RS12995 | Not Available | Negative | 2536549 - 2536905 | 12050.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
