Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system effector f-box protein xopi | BJD13_RS12890 | Not Available | Negative | 2517518 - 2518870 | 47591.9 |
| coce/nond family hydrolase | BJD13_RS12895 | Not Available | Negative | 2519095 - 2520675 | 54358.6 |
| thiamine-phosphate kinase | BJD13_RS12910 | Not Available | Negative | 2521147 - 2522121 | 33949.4 |
| transcription antitermination factor nusb | BJD13_RS12915 | Not Available | Negative | 2522232 - 2522720 | 17974.1 |
| 6,7-dimethyl-8-ribityllumazine synthase | BJD13_RS12920 | Not Available | Negative | 2522717 - 2523181 | 16242.5 |
| nfed family protein | BJD13_RS12925 | Not Available | Negative | 2523471 - 2524611 | 41437.8 |
| riboflavin synthase | BJD13_RS12930 | Not Available | Negative | 2524608 - 2525210 | 20884.9 |
| hypothetical protein | BJD13_RS12935 | Not Available | Positive | 2525777 - 2526400 | 22423.1 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | BJD13_RS12940 | Not Available | Negative | 2526496 - 2527605 | 38961.3 |
| gnat family n-acetyltransferase | BJD13_RS12945 | Not Available | Negative | 2527598 - 2528086 | 17790.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
