Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yran family protein | BJD13_RS12840 | Not Available | Positive | 2505934 - 2506302 | 13354.1 |
| metal-dependent hydrolase | BJD13_RS12845 | Not Available | Positive | 2506332 - 2506871 | 19274.7 |
| fad-binding oxidoreductase | BJD13_RS12850 | Not Available | Positive | 2506868 - 2508265 | 48263.9 |
| hypothetical protein | BJD13_RS12855 | Not Available | Positive | 2508333 - 2508941 | 22543.6 |
| response regulator | BJD13_RS12860 | Not Available | Negative | 2508922 - 2509638 | 26289.9 |
| sensor histidine kinase | BJD13_RS12865 | Not Available | Negative | 2509628 - 2512288 | 97082.7 |
| potassium-transporting atpase subunit kdpc | BJD13_RS12870 | Not Available | Negative | 2512438 - 2513067 | 21633.0 |
| potassium-transporting atpase subunit kdpb | BJD13_RS12875 | Not Available | Negative | 2513108 - 2515156 | 70615.5 |
| potassium-transporting atpase subunit kdpa | BJD13_RS12880 | Not Available | Negative | 2515169 - 2516962 | 63234.7 |
| potassium-transporting atpase subunit f | BJD13_RS12885 | Not Available | Negative | 2516978 - 2517070 | 3280.17 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
