Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan d,d-transpeptidase ftsi family protein | BJD13_RS12785 | Not Available | Negative | 2496773 - 2498641 | 66891.4 |
| cell division protein ftsl | BJD13_RS12795 | Not Available | Negative | 2498853 - 2499116 | 10017.4 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | BJD13_RS12800 | Not Available | Negative | 2499113 - 2500156 | 37064.3 |
| division/cell wall cluster transcriptional repressor mraz | BJD13_RS12805 | Not Available | Negative | 2500171 - 2500626 | 16879.2 |
| nrde family protein | BJD13_RS12810 | Not Available | Positive | 2500927 - 2501709 | 27601.8 |
| type ii toxin-antitoxin system ccda family antitoxin | BJD13_RS12815 | Not Available | Positive | 2501757 - 2502008 | 9304.86 |
| ccdb family protein | BJD13_RS12820 | Not Available | Positive | 2502005 - 2502322 | 11373.8 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 2502801 - 2503150 | Not Available |
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | BJD13_RS12830 | Not Available | Negative | 2503297 - 2504118 | 28956.7 |
| penicillin-binding protein activator | BJD13_RS12835 | Not Available | Positive | 2504239 - 2505930 | 58292.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
