Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s8 family serine peptidase | BJD13_RS12680 | Not Available | Negative | 2470639 - 2472396 | 61404.4 |
| nad(p)h-quinone oxidoreductase | BJD13_RS12685 | Not Available | Negative | 2472636 - 2473613 | 34162.3 |
| glycoside hydrolase family 2 tim barrel-domain containing protein | BJD13_RS12695 | Not Available | Positive | 2474025 - 2475407 | 49795.9 |
| methylenetetrahydrofolate reductase | BJD13_RS12700 | Not Available | Positive | 2475447 - 2476274 | 30263.2 |
| hypothetical protein | BJD13_RS12705 | Not Available | Positive | 2476320 - 2476949 | 23046.6 |
| nudix family hydrolase | BJD13_RS12710 | Not Available | Negative | 2477061 - 2478008 | 34951.1 |
| preprotein translocase subunit seca | BJD13_RS12715 | Not Available | Negative | 2478331 - 2481069 | 102497.0 |
| m23 family metallopeptidase | BJD13_RS12720 | Not Available | Negative | 2481226 - 2482167 | 33236.5 |
| duf721 domain-containing protein | BJD13_RS12725 | Not Available | Positive | 2482168 - 2482614 | 16181.7 |
| udp-3-o-acyl-n-acetylglucosamine deacetylase | BJD13_RS12730 | Not Available | Negative | 2482800 - 2483711 | 33563.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
