Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prolyl oligopeptidase family serine peptidase | BJD13_RS12625 | Not Available | Negative | 2457441 - 2459975 | 92183.5 |
| adenosylhomocysteinase | BJD13_RS12630 | Not Available | Positive | 2460245 - 2461687 | 52796.2 |
| class i sam-dependent methyltransferase | BJD13_RS12635 | Not Available | Negative | 2461926 - 2462708 | 28060.6 |
| sulfotransferase domain-containing protein | BJD13_RS12640 | Not Available | Negative | 2462740 - 2463672 | 35165.5 |
| sulfotransferase family protein | BJD13_RS12645 | Not Available | Negative | 2464181 - 2464867 | 25996.1 |
| duf3228 family protein | BJD13_RS12650 | Not Available | Negative | 2465018 - 2465575 | 21143.3 |
| duf2058 domain-containing protein | BJD13_RS12655 | Not Available | Negative | 2465810 - 2466355 | 20206.9 |
| alpha-amylase family protein | BJD13_RS12665 | Not Available | Positive | 2467014 - 2468441 | 51815.2 |
| gfo/idh/moca family protein | BJD13_RS12670 | Not Available | Negative | 2468845 - 2469780 | 33868.5 |
| voc family protein | BJD13_RS12675 | Not Available | Positive | 2470155 - 2470559 | 14217.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
