Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal-dependent hydrolase | BJD13_RS12575 | Not Available | Negative | 2441304 - 2442404 | 40616.5 |
| methionine adenosyltransferase | BJD13_RS12580 | Not Available | Positive | 2442649 - 2443860 | 43664.9 |
| histidine-type phosphatase | BJD13_RS12585 | Not Available | Negative | 2444431 - 2446044 | 55973.7 |
| tonb-dependent receptor | BJD13_RS12590 | Not Available | Negative | 2446034 - 2448805 | 99587.4 |
| nfed family protein | BJD13_RS12595 | Not Available | Positive | 2448804 - 2449156 | 13400.2 |
| ompa family protein | BJD13_RS12600 | Not Available | Negative | 2449297 - 2450559 | 42619.9 |
| esterase/lipase family protein | BJD13_RS12605 | Not Available | Negative | 2450641 - 2452635 | 72791.8 |
| duf4105 domain-containing protein | BJD13_RS12610 | Not Available | Negative | 2452632 - 2453669 | 38776.5 |
| tetr/acrr family transcriptional regulator | BJD13_RS12615 | Not Available | Negative | 2453666 - 2454238 | 20959.3 |
| phosphoenolpyruvate carboxylase | BJD13_RS12620 | Not Available | Negative | 2454375 - 2457089 | 100256.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
