Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | BJD13_RS02345 | Not Available | Positive | 155565 - 156167 | 21967.8 |
| carbon-nitrogen hydrolase family protein | BJD13_RS02350 | Not Available | Positive | 156292 - 157176 | 31394.5 |
| duf3616 domain-containing protein | BJD13_RS02355 | Not Available | Positive | 157198 - 158289 | 39863.8 |
| glutamate--trna ligase | BJD13_RS02360 | Not Available | Positive | 158357 - 159760 | 51886.1 |
| transcriptional repressor | BJD13_RS02365 | Not Available | Positive | 159774 - 160280 | 18304.9 |
| tetr/acrr family transcriptional regulator | BJD13_RS02370 | Not Available | Negative | 160594 - 161235 | 23376.8 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS02375 | Not Available | Positive | 161342 - 162562 | 42352.6 |
| efflux rnd transporter permease subunit | BJD13_RS02380 | Not Available | Positive | 162579 - 165722 | 112295.0 |
| efflux transporter outer membrane subunit | BJD13_RS02385 | Not Available | Positive | 165724 - 167229 | 53754.5 |
| tetr/acrr family transcriptional regulator | BJD13_RS02390 | Not Available | Positive | 167222 - 167902 | 24742.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
