Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS12525 | Not Available | Negative | 2428785 - 2429387 | 21630.1 |
| tonb-dependent hemoglobin/transferrin/lactoferrin family receptor | BJD13_RS12530 | Not Available | Negative | 2429393 - 2431624 | 81402.7 |
| hemin uptake protein hemp | BJD13_RS12535 | Not Available | Negative | 2431884 - 2432123 | 9066.21 |
| potassium channel beta subunit family protein | BJD13_RS12540 | Not Available | Negative | 2432285 - 2433253 | 35718.3 |
| nupc/nupg family nucleoside cnt transporter | BJD13_RS12550 | Not Available | Positive | 2434141 - 2435439 | 45092.2 |
| ribokinase | BJD13_RS12555 | Not Available | Positive | 2435530 - 2436480 | 32079.9 |
| hypothetical protein | BJD13_RS25570 | Not Available | Positive | 2436660 - 2436782 | 4534.64 |
| glycoside hydrolase family 98 domain-containing protein | BJD13_RS12560 | Not Available | Positive | 2437005 - 2439347 | 84363.6 |
| trna dihydrouridine synthase dusb | BJD13_RS12565 | Not Available | Positive | 2439456 - 2440454 | 35721.0 |
| class i sam-dependent methyltransferase | BJD13_RS12570 | Not Available | Positive | 2440483 - 2441310 | 30805.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
