Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | BJD13_RS12475 | Not Available | Negative | 2418611 - 2419324 | 26850.5 |
| arylesterase | BJD13_RS12480 | Not Available | Negative | 2419416 - 2420084 | 23797.4 |
| abc transporter atp-binding protein | BJD13_RS12485 | Not Available | Positive | 2420188 - 2420793 | 21275.4 |
| abc transporter permease | BJD13_RS12490 | Not Available | Positive | 2420790 - 2423273 | 87119.1 |
| taud/tfda dioxygenase family protein | BJD13_RS12495 | Not Available | Positive | 2423522 - 2424439 | 34518.9 |
| abc transporter substrate-binding protein | BJD13_RS12500 | Not Available | Positive | 2424480 - 2425526 | 37582.1 |
| abc transporter atp-binding protein | BJD13_RS12505 | Not Available | Positive | 2425530 - 2426363 | 30695.1 |
| abc transporter permease | BJD13_RS12510 | Not Available | Positive | 2426360 - 2427244 | 31663.4 |
| dmt family protein | BJD13_RS12515 | Not Available | Positive | 2427324 - 2427677 | 13186.5 |
| duf6607 family protein | BJD13_RS12520 | Not Available | Negative | 2427804 - 2428727 | 34960.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
