Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-octaprenyl-6-methoxyphenyl hydroxylase | BJD13_RS12370 | Not Available | Negative | 2399315 - 2400523 | 42695.2 |
| hypothetical protein | BJD13_RS12380 | Not Available | Positive | 2400864 - 2401442 | 21166.9 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | BJD13_RS12385 | Not Available | Positive | 2401446 - 2402003 | 19893.7 |
| histone deacetylase family protein | BJD13_RS12390 | Not Available | Positive | 2402042 - 2402950 | 32980.1 |
| lps-assembly protein lptd | BJD13_RS12395 | Not Available | Positive | 2403067 - 2405502 | 92044.5 |
| peptidylprolyl isomerase | BJD13_RS12400 | Not Available | Positive | 2405499 - 2406890 | 50091.8 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | BJD13_RS12405 | Not Available | Positive | 2406910 - 2407881 | 33676.2 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | BJD13_RS12410 | Not Available | Positive | 2407999 - 2408787 | 28589.6 |
| co2+/mg2+ efflux protein apag | BJD13_RS12415 | Not Available | Positive | 2408824 - 2409207 | 14196.6 |
| symmetrical bis(5'-nucleosyl)-tetraphosphatase | BJD13_RS12420 | Not Available | Positive | 2409236 - 2410192 | 35366.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
