Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase | BJD13_RS12320 | Not Available | Positive | 2388831 - 2390300 | 52359.9 |
| amp-binding protein | BJD13_RS12325 | Not Available | Positive | 2390507 - 2391985 | 52719.2 |
| lysr substrate-binding domain-containing protein | BJD13_RS12330 | Not Available | Negative | 2392163 - 2393164 | 36717.8 |
| protocatechuate 3,4-dioxygenase subunit alpha | BJD13_RS12335 | Not Available | Negative | 2393231 - 2393590 | 14255.3 |
| gallate dioxygenase | BJD13_RS12340 | Not Available | Negative | 2393601 - 2394497 | 32989.3 |
| gntr family transcriptional regulator | BJD13_RS12345 | Not Available | Positive | 2394731 - 2395405 | 24605.6 |
| transporter | BJD13_RS12350 | Not Available | Negative | 2395572 - 2396603 | 37676.7 |
| nuclear transport factor 2 family protein | BJD13_RS12355 | Not Available | Negative | 2396753 - 2397184 | 15648.7 |
| alpha/beta fold hydrolase | BJD13_RS12360 | Not Available | Negative | 2397287 - 2398009 | 25895.6 |
| ubih/ubif family hydroxylase | BJD13_RS12365 | Not Available | Negative | 2398137 - 2399318 | 42368.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
