Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Ncrna_class:other | Not Available | Not Available | Positive | 2380873 - 2380947 | Not Available |
| hypothetical protein | BJD13_RS12275 | Not Available | Positive | 2381213 - 2381593 | 12429.8 |
| nucleoside deaminase | BJD13_RS12280 | Not Available | Positive | 2381593 - 2382153 | 20390.3 |
| 23s rrna (cytidine(2498)-2'-o)-methyltransferase rlmm | BJD13_RS12285 | Not Available | Positive | 2382193 - 2383236 | 39003.3 |
| gfo/idh/moca family protein | BJD13_RS12290 | Not Available | Negative | 2383727 - 2384836 | 40674.9 |
| smp-30/gluconolactonase/lre family protein | BJD13_RS12295 | Not Available | Positive | 2384960 - 2385865 | 32080.9 |
| hypothetical protein | BJD13_RS12300 | Not Available | Positive | 2385947 - 2386669 | 26739.3 |
| hypothetical protein | BJD13_RS12305 | Not Available | Positive | 2386870 - 2387271 | 14375.9 |
| marr family winged helix-turn-helix transcriptional regulator | BJD13_RS12310 | Not Available | Positive | 2387401 - 2387874 | 16686.2 |
| p-hydroxycinnamoyl coa hydratase/lyase | BJD13_RS12315 | Not Available | Positive | 2387920 - 2388747 | 31268.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
