Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prolyl aminopeptidase | BJD13_RS12170 | Not Available | Negative | 2362692 - 2363633 | 35482.6 |
| peptide chain release factor n(5)-glutamine methyltransferase | BJD13_RS12175 | Not Available | Negative | 2363868 - 2364728 | 30238.8 |
| alkyl hydroperoxide reductase subunit c | BJD13_RS12180 | Not Available | Positive | 2364931 - 2365494 | 20463.4 |
| alkyl hydroperoxide reductase subunit f | BJD13_RS12185 | Not Available | Positive | 2365681 - 2367273 | 56926.2 |
| lysr substrate-binding domain-containing protein | BJD13_RS12190 | Not Available | Positive | 2367365 - 2368306 | 35139.8 |
| hypothetical protein | BJD13_RS24680 | Not Available | Negative | 2368496 - 2368756 | 9405.28 |
| nucleoside diphosphate kinase regulator | BJD13_RS12200 | Not Available | Positive | 2368838 - 2369278 | 15818.7 |
| transaldolase | BJD13_RS12205 | Not Available | Positive | 2369330 - 2370298 | 34671.3 |
| type 1 glutamine amidotransferase family protein | BJD13_RS12210 | Not Available | Positive | 2370661 - 2371230 | 20168.2 |
| peptide-methionine (s)-s-oxide reductase msra | BJD13_RS12215 | Not Available | Negative | 2371648 - 2372298 | 23405.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
