Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p) transhydrogenase subunit alpha | BJD13_RS12120 | Not Available | Negative | 2353144 - 2353449 | 10408.0 |
| rna polymerase sigma factor | BJD13_RS12125 | Not Available | Positive | 2353573 - 2354136 | 21061.9 |
| hypothetical protein | BJD13_RS12130 | Not Available | Positive | 2354133 - 2354483 | 12328.6 |
| duf3106 domain-containing protein | BJD13_RS12135 | Not Available | Positive | 2354489 - 2354980 | 19093.9 |
| nad(p) transhydrogenase subunit alpha | BJD13_RS12140 | Not Available | Negative | 2355400 - 2356497 | 37977.0 |
| duf1631 domain-containing protein | BJD13_RS12145 | Not Available | Negative | 2356644 - 2359001 | 86038.8 |
| nitroreductase | BJD13_RS12150 | Not Available | Positive | 2359594 - 2360169 | 20795.1 |
| 5'-3' exonuclease | BJD13_RS12155 | Not Available | Positive | 2360166 - 2361152 | 35969.0 |
| nudix hydrolase | BJD13_RS12160 | Not Available | Positive | 2361149 - 2361700 | 19941.7 |
| n-formylglutamate amidohydrolase | BJD13_RS12165 | Not Available | Positive | 2361693 - 2362481 | 28314.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
