Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 30 beta sandwich domain-containing protein | BJD13_RS12070 | Not Available | Negative | 2340171 - 2341391 | 43530.2 |
| asparaginase domain-containing protein | BJD13_RS12075 | Not Available | Positive | 2341903 - 2342388 | 17658.3 |
| cys-trna(pro) deacylase | BJD13_RS12080 | Not Available | Positive | 2342393 - 2342866 | 16557.2 |
| s8 family peptidase | BJD13_RS12085 | Not Available | Negative | 2343065 - 2344762 | 56686.6 |
| s8 family peptidase | BJD13_RS12090 | Not Available | Negative | 2345105 - 2346514 | 46942.7 |
| s8 family peptidase | BJD13_RS12095 | Not Available | Negative | 2346774 - 2348507 | 57195.7 |
| branched-chain amino acid aminotransferase | BJD13_RS12100 | Not Available | Negative | 2348814 - 2349899 | 39065.5 |
| putative fe-s cluster assembly protein suft | BJD13_RS12105 | Not Available | Negative | 2349964 - 2350518 | 20182.9 |
| hypothetical protein | BJD13_RS12110 | Not Available | Positive | 2350705 - 2351124 | 14649.4 |
| nad(p)(+) transhydrogenase (re/si-specific) subunit beta | BJD13_RS12115 | Not Available | Negative | 2351690 - 2353147 | 50367.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
