Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide chain release factor 1 | BJD13_RS12015 | Not Available | Positive | 2330916 - 2332001 | 39849.7 |
| tetratricopeptide repeat protein | BJD13_RS12020 | Not Available | Positive | 2331998 - 2333704 | 61329.2 |
| molybdenum cofactor biosynthesis protein b | BJD13_RS12030 | Not Available | Positive | 2334109 - 2334627 | 18821.6 |
| polyphosphate kinase 2 | BJD13_RS12035 | Not Available | Positive | 2334660 - 2335442 | 30196.2 |
| hypothetical protein | BJD13_RS12040 | Not Available | Negative | 2335424 - 2336653 | 45118.0 |
| acylphosphatase | BJD13_RS12045 | Not Available | Negative | 2336739 - 2337005 | 9005.67 |
| tlpa family protein disulfide reductase | BJD13_RS12050 | Not Available | Negative | 2337005 - 2337625 | 21568.0 |
| yihy family inner membrane protein | BJD13_RS12055 | Not Available | Negative | 2337622 - 2338899 | 48290.5 |
| nad(p)h:quinone oxidoreductase | BJD13_RS12060 | Not Available | Positive | 2339011 - 2339607 | 20291.3 |
| duf2069 domain-containing protein | BJD13_RS12065 | Not Available | Positive | 2339604 - 2339948 | 12226.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
