Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-tyr | Not Available | Not Available | Positive | 2322376 - 2322461 | Not Available |
| redox-regulated atpase ychf | BJD13_RS11970 | Not Available | Negative | 2322616 - 2323707 | 38880.4 |
| aminoacyl-trna hydrolase | BJD13_RS11975 | Not Available | Negative | 2323785 - 2324366 | 21009.5 |
| 50s ribosomal protein l25/general stress protein ctc | BJD13_RS11980 | Not Available | Negative | 2324418 - 2325053 | 23351.9 |
| ribose-phosphate diphosphokinase | BJD13_RS11985 | Not Available | Negative | 2325162 - 2326121 | 34605.0 |
| Trna-gln | Not Available | Not Available | Positive | 2326287 - 2326363 | Not Available |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | BJD13_RS11995 | Not Available | Negative | 2326367 - 2327254 | 31135.2 |
| lipoprotein insertase outer membrane protein lolb | BJD13_RS12000 | Not Available | Negative | 2327236 - 2327889 | 23149.1 |
| tetratricopeptide repeat protein | BJD13_RS12005 | Not Available | Negative | 2327886 - 2329574 | 61496.9 |
| glutamyl-trna reductase | BJD13_RS12010 | Not Available | Positive | 2329640 - 2330938 | 47233.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
