Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l7/l12 | BJD13_RS11915 | Not Available | Negative | 2316892 - 2317257 | 12486.1 |
| 50s ribosomal protein l10 | BJD13_RS11920 | Not Available | Negative | 2317312 - 2317845 | 18352.2 |
| 50s ribosomal protein l1 | BJD13_RS11925 | Not Available | Negative | 2318388 - 2319086 | 23968.1 |
| 50s ribosomal protein l11 | BJD13_RS11930 | Not Available | Negative | 2319090 - 2319518 | 14855.2 |
| transcription termination/antitermination protein nusg | BJD13_RS11935 | Not Available | Negative | 2319717 - 2320274 | 21177.3 |
| preprotein translocase subunit sece | BJD13_RS11940 | Not Available | Negative | 2320288 - 2320695 | 15002.5 |
| Trna-trp | Not Available | Not Available | Positive | 2320745 - 2320820 | Not Available |
| elongation factor tu | BJD13_RS11950 | Not Available | Negative | 2320927 - 2322117 | 43145.9 |
| Trna-thr | Not Available | Not Available | Positive | 2322164 - 2322239 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 2322273 - 2322346 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
