Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l4 | BJD13_RS11860 | Not Available | Negative | 2299999 - 2300604 | 21770.4 |
| 50s ribosomal protein l3 | BJD13_RS11865 | Not Available | Negative | 2300617 - 2301267 | 22872.6 |
| 30s ribosomal protein s10 | BJD13_RS11870 | Not Available | Negative | 2301279 - 2301614 | 12572.2 |
| hypothetical protein | BJD13_RS11880 | Not Available | Positive | 2302625 - 2303293 | 23795.9 |
| elongation factor tu | BJD13_RS11885 | Not Available | Negative | 2303573 - 2304763 | 43145.9 |
| elongation factor g | BJD13_RS11890 | Not Available | Negative | 2304812 - 2306929 | 77667.8 |
| 30s ribosomal protein s7 | BJD13_RS11895 | Not Available | Negative | 2307067 - 2307534 | 17275.0 |
| 30s ribosomal protein s12 | BJD13_RS11900 | Not Available | Negative | 2307547 - 2307921 | 13753.7 |
| dna-directed rna polymerase subunit beta' | BJD13_RS11905 | Not Available | Negative | 2308140 - 2312354 | 155117.0 |
| dna-directed rna polymerase subunit beta | BJD13_RS11910 | Not Available | Negative | 2312455 - 2316606 | 154234.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
