Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s13 | BJD13_RS11760 | Not Available | Negative | 2290018 - 2290374 | 13375.6 |
| preprotein translocase subunit secy | BJD13_RS11765 | Not Available | Negative | 2290707 - 2292071 | 47983.7 |
| 50s ribosomal protein l15 | BJD13_RS11770 | Not Available | Negative | 2292079 - 2292522 | 15334.7 |
| 50s ribosomal protein l30 | BJD13_RS11775 | Not Available | Negative | 2292527 - 2292718 | 7207.89 |
| 30s ribosomal protein s5 | BJD13_RS11780 | Not Available | Negative | 2292711 - 2293253 | 19183.2 |
| 50s ribosomal protein l18 | BJD13_RS11785 | Not Available | Negative | 2293412 - 2293771 | 12802.5 |
| 50s ribosomal protein l6 | BJD13_RS11790 | Not Available | Negative | 2293863 - 2294390 | 18409.7 |
| 30s ribosomal protein s8 | BJD13_RS11795 | Not Available | Negative | 2294406 - 2294804 | 14305.7 |
| 30s ribosomal protein s14 | BJD13_RS11800 | Not Available | Negative | 2295010 - 2295315 | 11540.2 |
| 50s ribosomal protein l5 | BJD13_RS11805 | Not Available | Negative | 2295334 - 2295876 | 20143.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
