Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS11645 | Not Available | Negative | 2266350 - 2266865 | 17781.4 |
| ompa family protein | BJD13_RS11650 | Not Available | Negative | 2267058 - 2268155 | 39477.5 |
| zinc-binding alcohol dehydrogenase family protein | BJD13_RS11655 | Not Available | Positive | 2268571 - 2269593 | 36777.2 |
| nadph-dependent 2,4-dienoyl-coa reductase | BJD13_RS11660 | Not Available | Positive | 2269797 - 2271836 | 73133.0 |
| cell wall hydrolase | BJD13_RS11675 | Not Available | Positive | 2273190 - 2273651 | 16779.1 |
| glutathione binding-like protein | BJD13_RS11680 | Not Available | Positive | 2274060 - 2274674 | 22196.6 |
| malate dehydrogenase | BJD13_RS11685 | Not Available | Negative | 2274758 - 2275744 | 34880.1 |
| peptidylprolyl isomerase | BJD13_RS11690 | Not Available | Negative | 2275863 - 2276357 | 17457.5 |
| translational gtpase typa | BJD13_RS11695 | Not Available | Positive | 2276599 - 2278428 | 67310.9 |
| duf2127 domain-containing protein | BJD13_RS11700 | Not Available | Positive | 2278496 - 2278915 | 15029.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
