Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | BJD13_RS11590 | Not Available | Positive | 2254486 - 2256909 | 88006.4 |
| l-threonine 3-dehydrogenase | BJD13_RS11595 | Not Available | Positive | 2257182 - 2258216 | 37582.8 |
| torf family putative porin | BJD13_RS11605 | Not Available | Negative | 2258881 - 2259597 | 25961.8 |
| sulfate/molybdate abc transporter atp-binding protein | BJD13_RS11610 | Not Available | Negative | 2259875 - 2260906 | 38082.9 |
| sulfate abc transporter permease subunit cysw | BJD13_RS11615 | Not Available | Negative | 2260914 - 2261867 | 34915.3 |
| sulfate abc transporter permease subunit cyst | BJD13_RS11620 | Not Available | Negative | 2261864 - 2262724 | 30936.5 |
| sulfate abc transporter substrate-binding protein | BJD13_RS11625 | Not Available | Negative | 2262728 - 2263825 | 40584.3 |
| glycine c-acetyltransferase | BJD13_RS11630 | Not Available | Positive | 2263916 - 2265124 | 43435.2 |
| hnh endonuclease | BJD13_RS11635 | Not Available | Positive | 2265127 - 2265519 | 14015.8 |
| pseudouridine synthase | BJD13_RS11640 | Not Available | Negative | 2265470 - 2266330 | 30698.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
