Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxymuconolactone decarboxylase family protein | BJD13_RS11485 | Not Available | Negative | 2228628 - 2229023 | 14582.3 |
| glutaredoxin 3 | BJD13_RS11490 | Not Available | Negative | 2229020 - 2229328 | 10995.2 |
| m48 family metalloprotease | BJD13_RS11495 | Not Available | Positive | 2229418 - 2231124 | 61956.7 |
| phosphate regulon transcriptional regulator phob | BJD13_RS11500 | Not Available | Positive | 2231308 - 2231997 | 26004.3 |
| phosphate regulon sensor histidine kinase phor | BJD13_RS11505 | Not Available | Positive | 2232071 - 2233399 | 49172.4 |
| polyphosphate kinase 1 | BJD13_RS11510 | Not Available | Positive | 2233512 - 2235614 | 78525.0 |
| exopolyphosphatase | BJD13_RS11515 | Not Available | Positive | 2235792 - 2237312 | 55682.6 |
| glycosyltransferase family 4 protein | BJD13_RS11520 | Not Available | Positive | 2237529 - 2238665 | 41707.6 |
| phosphatase pap2 family protein | BJD13_RS11525 | Not Available | Positive | 2238646 - 2239188 | 19902.7 |
| udp-2,3-diacylglucosamine diphosphatase | BJD13_RS11530 | Not Available | Positive | 2239706 - 2240449 | 26982.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
