Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp endopeptidase proteolytic subunit clpp | BJD13_RS11435 | Not Available | Negative | 2221668 - 2222294 | 22797.5 |
| trigger factor | BJD13_RS11440 | Not Available | Negative | 2222387 - 2223679 | 48289.5 |
| Trna-leu | Not Available | Not Available | Positive | 2223881 - 2223965 | Not Available |
| pas domain-containing sensor histidine kinase | BJD13_RS11450 | Not Available | Positive | 2224214 - 2225482 | 45260.8 |
| Trna-lys | Not Available | Not Available | Positive | 2225874 - 2225949 | Not Available |
| Trna-his | Not Available | Not Available | Positive | 2226043 - 2226119 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 2226152 - 2226228 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 2226271 - 2226347 | Not Available |
| bax inhibitor-1/ycca family membrane protein | BJD13_RS11475 | Not Available | Positive | 2226498 - 2227259 | 27016.5 |
| isocitrate dehydrogenase | BJD13_RS11480 | Not Available | Negative | 2227394 - 2228401 | 35563.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
