Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS11385 | Not Available | Negative | 2211284 - 2211940 | 24175.4 |
| hydroxyacylglutathione hydrolase | BJD13_RS11390 | Not Available | Positive | 2211953 - 2212720 | 27853.3 |
| lytic transglycosylase domain-containing protein | BJD13_RS11395 | Not Available | Positive | 2212717 - 2213895 | 41080.6 |
| peptidyl-prolyl cis-trans isomerase | BJD13_RS11400 | Not Available | Negative | 2214545 - 2216515 | 71259.7 |
| Trna-asp | Not Available | Not Available | Positive | 2216792 - 2216868 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 2216963 - 2217039 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 2217068 - 2217142 | Not Available |
| hu family dna-binding protein | BJD13_RS11420 | Not Available | Negative | 2217154 - 2217426 | 9328.17 |
| endopeptidase la | BJD13_RS11425 | Not Available | Negative | 2217640 - 2220111 | 90628.5 |
| atp-dependent clp protease atp-binding subunit clpx | BJD13_RS11430 | Not Available | Negative | 2220256 - 2221542 | 47137.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
