Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS11335 | Not Available | Negative | 2202639 - 2203367 | 27185.9 |
| helix-turn-helix domain-containing protein | BJD13_RS11340 | Not Available | Negative | 2203511 - 2203678 | 6181.35 |
| dna adenine methylase | BJD13_RS11345 | Not Available | Positive | 2203805 - 2204677 | 32725.6 |
| conjugal transfer protein trad | BJD13_RS11350 | Not Available | Negative | 2204863 - 2205216 | 13035.0 |
| mobq family relaxase | BJD13_RS11355 | Not Available | Positive | 2205463 - 2207442 | 74167.7 |
| site-specific integrase | BJD13_RS11360 | Not Available | Negative | 2207457 - 2208938 | 55664.0 |
| Trna-ser | Not Available | Not Available | Positive | 2209027 - 2209117 | Not Available |
| pp2c family protein-serine/threonine phosphatase | BJD13_RS11370 | Not Available | Positive | 2209315 - 2210019 | 25117.7 |
| dna polymerase iii subunit epsilon | BJD13_RS11375 | Not Available | Negative | 2210061 - 2210795 | 26784.9 |
| ribonuclease hi | BJD13_RS11380 | Not Available | Negative | 2210804 - 2211256 | 16868.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
