Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS11235 | Not Available | Positive | 2188252 - 2188566 | 11142.3 |
| hypothetical protein | BJD13_RS11240 | Not Available | Positive | 2188563 - 2188946 | 14281.8 |
| abi family protein | BJD13_RS11245 | Not Available | Positive | 2189124 - 2190020 | 34146.2 |
| duf3892 domain-containing protein | BJD13_RS11250 | Not Available | Positive | 2190428 - 2190730 | 11109.0 |
| hypothetical protein | BJD13_RS11255 | Not Available | Positive | 2190760 - 2191119 | 13888.0 |
| pycsar phage resistance system effector protein pyctir | BJD13_RS11260 | Not Available | Positive | 2191192 - 2192103 | 33780.6 |
| pycsar phage resistance system uridylate cyclase pycc | BJD13_RS11265 | Not Available | Positive | 2192112 - 2192807 | 25965.8 |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 2193669 - 2193765 | Not Available |
| molybdenum cofactor biosynthesis protein moae | BJD13_RS11275 | Not Available | Negative | 2193927 - 2194373 | 16415.4 |
| molybdopterin converting factor subunit 1 | BJD13_RS11280 | Not Available | Negative | 2194370 - 2194615 | 8776.33 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
