Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | BJD13_RS11130 | Not Available | Negative | 2169017 - 2169376 | 13035.8 |
| type ii toxin-antitoxin system higb family toxin | BJD13_RS11135 | Not Available | Negative | 2169378 - 2169680 | 11535.7 |
| hypothetical protein | BJD13_RS11140 | Not Available | Positive | 2169995 - 2170336 | 12380.8 |
| moba/mobl family protein | BJD13_RS11145 | Not Available | Negative | 2170389 - 2171981 | 59022.8 |
| is3-like element isxca2 family transposase | BJD13_RS11150 | Not Available | Negative | 2171978 - 2173086 | 43192.7 |
| hypothetical protein | BJD13_RS11160 | Not Available | Positive | 2173455 - 2173721 | 10267.0 |
| anti-phage-associated helicase hera | BJD13_RS11165 | Not Available | Negative | 2173767 - 2175542 | 64286.7 |
| sir2 family anti-phage-associated protein | BJD13_RS11170 | Not Available | Negative | 2175539 - 2176846 | 48119.8 |
| nfed family protein | BJD13_RS25625 | Not Available | Negative | 2176927 - 2177328 | 14912.1 |
| hypothetical protein | BJD13_RS11180 | Not Available | Negative | 2178329 - 2178928 | 21040.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
