Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | BJD13_RS11080 | Not Available | Positive | 2158971 - 2159924 | 33837.9 |
| duf58 domain-containing protein | BJD13_RS11085 | Not Available | Positive | 2159929 - 2160885 | 35838.9 |
| transglutaminasetgpa domain-containing protein | BJD13_RS11090 | Not Available | Positive | 2160878 - 2162830 | 72047.8 |
| slp family lipoprotein | BJD13_RS11095 | Not Available | Positive | 2162827 - 2163360 | 19266.8 |
| histidine triad nucleotide-binding protein | BJD13_RS11100 | Not Available | Negative | 2163478 - 2163828 | 12695.4 |
| recombination mediator recr | BJD13_RS11105 | Not Available | Negative | 2163934 - 2164527 | 21472.8 |
| ybab/ebfc family nucleoid-associated protein | BJD13_RS11110 | Not Available | Negative | 2164629 - 2164949 | 11422.8 |
| dna polymerase iii subunit gamma/tau | BJD13_RS11115 | Not Available | Negative | 2164956 - 2167028 | 71880.2 |
| Trna-ser | Not Available | Not Available | Positive | 2167164 - 2167256 | Not Available |
| site-specific integrase | BJD13_RS24675 | Not Available | Positive | 2167344 - 2168864 | 56402.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
