Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylisocitrate lyase | BJD13_RS10980 | Not Available | Negative | 2139653 - 2140549 | 31640.7 |
| propionate catabolism operon regulatory protein prpr | BJD13_RS10985 | Not Available | Positive | 2140695 - 2142296 | 58286.2 |
| hypothetical protein | BJD13_RS10990 | Not Available | Negative | 2142522 - 2142848 | 11604.9 |
| nfed family protein | BJD13_RS25230 | Not Available | Negative | 2143052 - 2143613 | 20081.6 |
| Trna-val | Not Available | Not Available | Positive | 2143691 - 2143765 | Not Available |
| pilz domain-containing protein | BJD13_RS11005 | Not Available | Negative | 2143930 - 2144283 | 12431.2 |
| dna polymerase iii subunit delta' | BJD13_RS11010 | Not Available | Negative | 2144280 - 2145239 | 34718.5 |
| endolytic transglycosylase mltg | BJD13_RS11015 | Not Available | Negative | 2145236 - 2146309 | 38609.9 |
| aminodeoxychorismate synthase component i | BJD13_RS11020 | Not Available | Negative | 2146370 - 2147725 | 48385.8 |
| beta-ketoacyl-acp synthase ii | BJD13_RS11025 | Not Available | Negative | 2147891 - 2149126 | 42914.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
