Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Ncrna_class:other | Not Available | Not Available | Positive | 2078366 - 2078442 | Not Available |
| gh92 family glycosyl hydrolase | BJD13_RS10760 | Not Available | Positive | 2078570 - 2080924 | 86005.0 |
| sdr family oxidoreductase | BJD13_RS10765 | Not Available | Positive | 2081357 - 2082259 | 32056.1 |
| glycoside hydrolase family 15 protein | BJD13_RS10770 | Not Available | Positive | 2082256 - 2084061 | 66422.6 |
| glycoside hydrolase family 30 protein | BJD13_RS10775 | Not Available | Negative | 2084191 - 2085669 | 53517.2 |
| nad(p)h-hydrate dehydratase | BJD13_RS10780 | Not Available | Negative | 2085992 - 2086861 | 28812.2 |
| histidine phosphatase family protein | BJD13_RS10785 | Not Available | Negative | 2086861 - 2087649 | 28565.8 |
| tetr/acrr family transcriptional regulator | BJD13_RS10790 | Not Available | Positive | 2087857 - 2088486 | 23711.1 |
| type iii secretion system effector xopav | BJD13_RS10795 | Not Available | Negative | 2088550 - 2089326 | 27188.2 |
| serine/threonine protein kinase | BJD13_RS10805 | Not Available | Positive | 2089727 - 2091301 | 57389.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
