Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| (2fe-2s)-binding protein | BJD13_RS10705 | Not Available | Positive | 2065175 - 2065753 | 20260.0 |
| fad binding domain-containing protein | BJD13_RS10710 | Not Available | Positive | 2065726 - 2066814 | 38426.8 |
| xanthine dehydrogenase family protein molybdopterin-binding subunit | BJD13_RS10715 | Not Available | Positive | 2066811 - 2069108 | 83093.1 |
| excinuclease abc subunit uvra | BJD13_RS10720 | Not Available | Negative | 2069521 - 2072049 | 90745.5 |
| hd domain-containing protein | BJD13_RS10725 | Not Available | Negative | 2072284 - 2072922 | 23060.2 |
| eal domain-containing protein | BJD13_RS10730 | Not Available | Positive | 2073071 - 2073817 | 27306.9 |
| ubp-type zinc finger domain-containing protein | BJD13_RS10735 | Not Available | Negative | 2074021 - 2074326 | 11283.2 |
| fad-dependent oxidoreductase | BJD13_RS10740 | Not Available | Negative | 2074323 - 2076032 | 59711.2 |
| alpha-ketoglutarate-dependent dioxygenase alkb | BJD13_RS10745 | Not Available | Negative | 2076382 - 2077011 | 23068.8 |
| sdr family oxidoreductase | BJD13_RS10750 | Not Available | Positive | 2077173 - 2078153 | 34465.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
