Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| error-prone dna polymerase | BJD13_RS10655 | Not Available | Negative | 2054872 - 2058120 | 120374.0 |
| y-family dna polymerase | BJD13_RS10660 | Not Available | Negative | 2058293 - 2059711 | 53402.5 |
| translesion dna synthesis-associated protein imua | BJD13_RS10665 | Not Available | Negative | 2059721 - 2060374 | 23133.9 |
| transcriptional repressor lexa | BJD13_RS10670 | Not Available | Negative | 2060376 - 2060981 | 21429.0 |
| abrb/maze/spovt family dna-binding domain-containing protein | BJD13_RS10675 | Not Available | Positive | 2061131 - 2061352 | 8034.98 |
| type ii toxin-antitoxin system death-on-curing family toxin | BJD13_RS10680 | Not Available | Positive | 2061361 - 2061786 | 15617.6 |
| duf6496 domain-containing protein | BJD13_RS10685 | Not Available | Negative | 2061895 - 2062398 | 17252.7 |
| cupin domain-containing protein | BJD13_RS10690 | Not Available | Negative | 2062561 - 2062905 | 12110.2 |
| giy-yig nuclease family protein | BJD13_RS10695 | Not Available | Negative | 2062968 - 2063561 | 22381.7 |
| duf763 domain-containing protein | BJD13_RS10700 | Not Available | Negative | 2063558 - 2064877 | 47641.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
