Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hlyd family secretion protein | BJD13_RS10545 | Not Available | Negative | 2024655 - 2025998 | 49052.3 |
| ripp modification sulfotransferase raxst | BJD13_RS10550 | Not Available | Negative | 2025979 - 2026782 | 29939.0 |
| raxx family ripp | BJD13_RS10555 | Not Available | Positive | 2027206 - 2027385 | 6299.41 |
| aminomethyl-transferring glycine dehydrogenase | BJD13_RS10560 | Not Available | Positive | 2027842 - 2030715 | 102917.0 |
| carboxylesterase/lipase family protein | BJD13_RS10565 | Not Available | Positive | 2030894 - 2032528 | 57851.8 |
| aldo/keto reductase | BJD13_RS10570 | Not Available | Positive | 2032586 - 2033440 | 30565.5 |
| catalase | BJD13_RS10575 | Not Available | Positive | 2033648 - 2035756 | 76498.2 |
| hypothetical protein | BJD13_RS10585 | Not Available | Positive | 2036556 - 2037791 | 44263.9 |
| hypothetical protein | BJD13_RS24665 | Not Available | Negative | 2037856 - 2038041 | 6724.98 |
| type iii secretion system effector xopp | BJD13_RS10590 | Not Available | Negative | 2038117 - 2040267 | 78282.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
