Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS10490 | Not Available | Positive | 2010794 - 2011285 | 17446.5 |
| sensor histidine kinase | BJD13_RS10495 | Not Available | Negative | 2011456 - 2012772 | 47609.7 |
| response regulator transcription factor | BJD13_RS10500 | Not Available | Negative | 2012738 - 2013454 | 26704.3 |
| arnt family glycosyltransferase | BJD13_RS10505 | Not Available | Positive | 2013671 - 2015401 | 63500.6 |
| phosphatase pap2 family protein | BJD13_RS10510 | Not Available | Positive | 2015501 - 2016265 | 27478.9 |
| phosphoethanolamine transferase | BJD13_RS10515 | Not Available | Positive | 2016262 - 2017929 | 61703.8 |
| m2 family metallopeptidase | BJD13_RS10520 | Not Available | Positive | 2018044 - 2020062 | 74653.2 |
| hypothetical protein | BJD13_RS10530 | Not Available | Negative | 2020546 - 2020950 | 14831.6 |
| multidrug effflux mfs transporter | BJD13_RS10535 | Not Available | Negative | 2020967 - 2022220 | 45249.6 |
| peptidase domain-containing abc transporter raxb | BJD13_RS10540 | Not Available | Negative | 2022499 - 2024658 | 79258.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
