Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| single-stranded dna-binding protein | BJD13_RS02130 | Not Available | Positive | 105940 - 106473 | 18926.0 |
| diguanylate cyclase | BJD13_RS02135 | Not Available | Negative | 106759 - 108243 | 53940.1 |
| zinc-dependent alcohol dehydrogenase family protein | BJD13_RS02140 | Not Available | Positive | 108531 - 109538 | 34962.9 |
| aldehyde dehydrogenase iron-sulfur subunit paoa | BJD13_RS02145 | Not Available | Positive | 109967 - 110617 | 22692.2 |
| fad binding domain-containing protein | BJD13_RS02150 | Not Available | Positive | 110614 - 111564 | 33635.3 |
| aldehyde oxidoreductase molybdenum-binding subunit paoc | BJD13_RS02155 | Not Available | Positive | 111566 - 113773 | 77899.6 |
| xdhc family protein | BJD13_RS02160 | Not Available | Positive | 113770 - 114774 | 35518.7 |
| nucleotidyltransferase family protein | BJD13_RS02165 | Not Available | Positive | 115180 - 115788 | 21207.4 |
| hypothetical protein | BJD13_RS02170 | Not Available | Positive | 116456 - 116671 | 8109.68 |
| duf819 domain-containing protein | BJD13_RS02175 | Not Available | Positive | 116839 - 118089 | 44265.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
