Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS10385 | Not Available | Positive | 1994139 - 1994624 | 18164.4 |
| ef-hand domain-containing protein | BJD13_RS10390 | Not Available | Negative | 1994792 - 1995382 | 21058.4 |
| arginyltransferase | BJD13_RS10395 | Not Available | Positive | 1995423 - 1996337 | 34662.3 |
| endonuclease/exonuclease/phosphatase family protein | BJD13_RS10400 | Not Available | Positive | 1996291 - 1997622 | 47734.2 |
| hypothetical protein | BJD13_RS10405 | Not Available | Positive | 1997878 - 1998492 | 23173.4 |
| xvipcd domain-containing protein | BJD13_RS25400 | Not Available | Positive | 1998521 - 1999573 | 38894.4 |
| formate-dependent phosphoribosylglycinamide formyltransferase | BJD13_RS10415 | Not Available | Negative | 1999704 - 2000906 | 42898.2 |
| spfh domain-containing protein | BJD13_RS10420 | Not Available | Positive | 2001031 - 2001900 | 31356.9 |
| hypothetical protein | BJD13_RS10425 | Not Available | Positive | 2002057 - 2002341 | 9864.47 |
| hypothetical protein | BJD13_RS10430 | Not Available | Positive | 2002338 - 2002520 | 6881.17 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
