Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtpase obge | BJD13_RS10335 | Not Available | Negative | 1983896 - 1984963 | 38199.7 |
| 50s ribosomal protein l27 | BJD13_RS10340 | Not Available | Negative | 1985210 - 1985470 | 9101.98 |
| 50s ribosomal protein l21 | BJD13_RS10345 | Not Available | Negative | 1985483 - 1985803 | 11798.4 |
| excinuclease abc subunit uvra | BJD13_RS10350 | Not Available | Positive | 1986096 - 1989062 | 109360.0 |
| acyl-coa thioesterase | BJD13_RS10355 | Not Available | Positive | 1989062 - 1989466 | 14958.9 |
| copper chaperone pcu(a)c | BJD13_RS10360 | Not Available | Negative | 1989580 - 1990008 | 14611.9 |
| enoyl-coa hydratase/isomerase family protein | BJD13_RS10365 | Not Available | Positive | 1990074 - 1990844 | 27258.2 |
| acyl-coa thioesterase ii | BJD13_RS10370 | Not Available | Positive | 1990914 - 1991819 | 33271.4 |
| putative signal transducing protein | BJD13_RS10375 | Not Available | Positive | 1992064 - 1992576 | 19029.5 |
| rna polymerase sigma factor | BJD13_RS10380 | Not Available | Positive | 1992686 - 1993879 | 42176.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
