Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase class iv family protein | BJD13_RS10130 | Not Available | Negative | 1931718 - 1932515 | 28413.2 |
| nad(p)h-dependent flavin oxidoreductase | BJD13_RS10135 | Not Available | Negative | 1932506 - 1933576 | 36652.7 |
| signal recognition particle protein | BJD13_RS10140 | Not Available | Negative | 1933770 - 1935146 | 49362.1 |
| inner membrane protein ypjd | BJD13_RS10145 | Not Available | Positive | 1935477 - 1936268 | 28745.1 |
| aldose epimerase family protein | BJD13_RS10155 | Not Available | Negative | 1936536 - 1937585 | 37515.3 |
| alpha-n-arabinofuranosidase | BJD13_RS10160 | Not Available | Positive | 1937823 - 1939406 | 57919.9 |
| response regulator | BJD13_RS10165 | Not Available | Negative | 1939634 - 1940002 | 13419.3 |
| pas domain-containing sensor histidine kinase | BJD13_RS10170 | Not Available | Negative | 1939995 - 1941158 | 41983.1 |
| response regulator | BJD13_RS10175 | Not Available | Positive | 1941318 - 1944491 | 114369.0 |
| cher family methyltransferase | BJD13_RS10180 | Not Available | Positive | 1944464 - 1945312 | 32223.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
