Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| osmc family protein | BJD13_RS02075 | Not Available | Positive | 94107 - 94541 | 15266.1 |
| glycine zipper 2tm domain-containing protein | BJD13_RS02080 | Not Available | Positive | 94694 - 95293 | 21810.2 |
| phzf family phenazine biosynthesis protein | BJD13_RS02085 | Not Available | Negative | 95557 - 96438 | 31281.9 |
| phzf family phenazine biosynthesis protein | BJD13_RS02090 | Not Available | Negative | 96470 - 97348 | 31027.8 |
| bifunctional aspartate kinase/diaminopimelate decarboxylase | BJD13_RS02095 | Not Available | Positive | 97548 - 100157 | 94161.4 |
| hypothetical protein | BJD13_RS02100 | Not Available | Positive | 100141 - 100599 | 16414.6 |
| udp-n-acetyl-alpha-d-muramoyl-l-alanyl-l- glutamate epimerase | BJD13_RS02105 | Not Available | Positive | 100596 - 101951 | 49244.0 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | BJD13_RS02110 | Not Available | Positive | 101932 - 103338 | 49487.1 |
| dienelactone hydrolase family protein | BJD13_RS02120 | Not Available | Positive | 103660 - 104460 | 27832.3 |
| polyprenyl synthetase family protein | BJD13_RS02125 | Not Available | Negative | 104666 - 105664 | 35660.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
