Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna repair protein reco | BJD13_RS09930 | Not Available | Negative | 1877823 - 1878545 | 26928.6 |
| gtpase era | BJD13_RS09935 | Not Available | Negative | 1878778 - 1879677 | 32779.7 |
| ribonuclease iii | BJD13_RS09940 | Not Available | Negative | 1879674 - 1880354 | 24613.4 |
| duf4845 domain-containing protein | BJD13_RS09945 | Not Available | Negative | 1880344 - 1880751 | 15384.8 |
| signal peptidase i | BJD13_RS09950 | Not Available | Negative | 1880752 - 1881552 | 29958.4 |
| translation elongation factor 4 | BJD13_RS09955 | Not Available | Negative | 1881658 - 1883448 | 65883.9 |
| degq family serine endoprotease | BJD13_RS09960 | Not Available | Negative | 1883629 - 1885206 | 53899.7 |
| rsea family anti-sigma factor | BJD13_RS09965 | Not Available | Negative | 1885316 - 1886212 | 30626.7 |
| rna polymerase sigma factor rpoe | BJD13_RS09970 | Not Available | Negative | 1886209 - 1886829 | 23961.4 |
| 3-hydroxyacyl-coa dehydrogenase nad-binding domain-containing protein | BJD13_RS09975 | Not Available | Positive | 1887066 - 1889147 | 73838.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
