Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold-shock protein | BJD13_RS09875 | Not Available | Negative | 1868115 - 1868321 | 7293.39 |
| s-methyl-5'-thioinosine phosphorylase | BJD13_RS09880 | Not Available | Negative | 1868409 - 1869161 | 26168.5 |
| hypoxanthine-guanine phosphoribosyltransferase | BJD13_RS09885 | Not Available | Negative | 1869249 - 1869803 | 20178.2 |
| beta-n-acetylhexosaminidase | BJD13_RS09890 | Not Available | Negative | 1869803 - 1870807 | 34985.6 |
| cryptochrome/photolyase family protein | BJD13_RS09895 | Not Available | Negative | 1870923 - 1872563 | 61827.7 |
| nad(p)/fad-dependent oxidoreductase | BJD13_RS09900 | Not Available | Negative | 1872681 - 1873715 | 36632.7 |
| dsba family oxidoreductase | BJD13_RS09905 | Not Available | Negative | 1873732 - 1874415 | 23718.2 |
| cyth domain-containing protein | BJD13_RS09910 | Not Available | Negative | 1874630 - 1875127 | 18503.9 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | BJD13_RS09915 | Not Available | Negative | 1875207 - 1876541 | 49360.3 |
| response regulator | BJD13_RS09920 | Not Available | Positive | 1876700 - 1877422 | 26090.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
