Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diguanylate cyclase | BJD13_RS09825 | Not Available | Positive | 1857494 - 1859203 | 62027.5 |
| bactofilin family protein | BJD13_RS09830 | Not Available | Positive | 1859437 - 1859994 | 18689.0 |
| hypothetical protein | BJD13_RS24660 | Not Available | Positive | 1859991 - 1860356 | 12935.4 |
| Ncrna_class:other | Not Available | Not Available | Positive | 1860418 - 1860492 | Not Available |
| ligase-associated dna damage response exonuclease | BJD13_RS09845 | Not Available | Positive | 1860739 - 1861761 | 37737.3 |
| hypothetical protein | BJD13_RS09850 | Not Available | Positive | 1861758 - 1861991 | 8672.81 |
| atp-dependent dna ligase | BJD13_RS09855 | Not Available | Positive | 1861988 - 1863592 | 59863.9 |
| ligase-associated dna damage response dexh box helicase | BJD13_RS09860 | Not Available | Positive | 1863589 - 1866090 | 91650.6 |
| ligase-associated dna damage response endonuclease pdem | BJD13_RS09865 | Not Available | Positive | 1866080 - 1866730 | 23747.8 |
| fad-dependent oxidoreductase | BJD13_RS09870 | Not Available | Negative | 1866749 - 1868020 | 46767.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
