Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2789 domain-containing protein | BJD13_RS09775 | Not Available | Positive | 1847899 - 1848153 | 9428.97 |
| duf1328 domain-containing protein | BJD13_RS09780 | Not Available | Negative | 1848311 - 1848484 | 5882.84 |
| ygjp-like metallopeptidase domain-containing protein | BJD13_RS09785 | Not Available | Positive | 1848763 - 1849392 | 23967.9 |
| Ncrna_class:other | Not Available | Not Available | Positive | 1849495 - 1849572 | Not Available |
| 2og-fe(ii) oxygenase | BJD13_RS24655 | Not Available | Positive | 1849589 - 1850845 | 44577.0 |
| glu/leu/phe/val dehydrogenase dimerization domain-containing protein | BJD13_RS09800 | Not Available | Positive | 1851002 - 1852102 | 39714.7 |
| autotransporter serine protease | BJD13_RS09805 | Not Available | Negative | 1852201 - 1855038 | 97059.3 |
| thiolase family protein | BJD13_RS09810 | Not Available | Positive | 1855192 - 1856367 | 39801.8 |
| hypothetical protein | BJD13_RS09815 | Not Available | Positive | 1856490 - 1856831 | 10622.8 |
| hypothetical protein | BJD13_RS09820 | Not Available | Positive | 1857060 - 1857386 | 11042.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
