Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1295 domain-containing protein | BJD13_RS09675 | Not Available | Positive | 1828502 - 1829284 | 28591.6 |
| sam-dependent methyltransferase | BJD13_RS09680 | Not Available | Positive | 1829302 - 1830372 | 40952.6 |
| rida family protein | BJD13_RS09685 | Not Available | Negative | 1830529 - 1830876 | 12559.0 |
| duf998 domain-containing protein | BJD13_RS09690 | Not Available | Negative | 1830887 - 1831765 | 32333.5 |
| bifunctional lysylphosphatidylglycerol flippase/synthetase mprf | BJD13_RS09695 | Not Available | Positive | 1831858 - 1834422 | 92695.0 |
| virulence factor | BJD13_RS09700 | Not Available | Negative | 1834720 - 1836093 | 48689.4 |
| oxidoreductase-like domain-containing protein | BJD13_RS09705 | Not Available | Negative | 1836163 - 1836357 | 7056.21 |
| hypothetical protein | BJD13_RS09710 | Not Available | Negative | 1836418 - 1837023 | 22655.0 |
| rna 2',3'-cyclic phosphodiesterase | BJD13_RS09715 | Not Available | Negative | 1837059 - 1837661 | 22170.5 |
| pa2169 family four-helix-bundle protein | BJD13_RS09720 | Not Available | Negative | 1837932 - 1838387 | 16372.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
