Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnf electron transport complex subunit rnfb | BJD13_RS09620 | Not Available | Positive | 1819585 - 1820013 | 14746.8 |
| hypothetical protein | BJD13_RS09630 | Not Available | Positive | 1820625 - 1821413 | 28820.3 |
| hypothetical protein | BJD13_RS09635 | Not Available | Positive | 1821499 - 1821867 | 13344.7 |
| sigma-70 family rna polymerase sigma factor | BJD13_RS09640 | Not Available | Positive | 1821926 - 1822489 | 21021.0 |
| anti-sigma factor domain-containing protein | BJD13_RS09645 | Not Available | Positive | 1822486 - 1823319 | 29106.9 |
| acyl-coa desaturase | BJD13_RS09650 | Not Available | Positive | 1823542 - 1824540 | 37961.5 |
| nad(p)/fad-dependent oxidoreductase | BJD13_RS09655 | Not Available | Positive | 1824537 - 1825787 | 46415.1 |
| duf1365 domain-containing protein | BJD13_RS09660 | Not Available | Positive | 1825787 - 1826671 | 34415.4 |
| sam-dependent methyltransferase | BJD13_RS09665 | Not Available | Positive | 1826668 - 1827963 | 48089.7 |
| duf2878 domain-containing protein | BJD13_RS09670 | Not Available | Positive | 1827960 - 1828505 | 19761.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
