Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copd family protein | BJD13_RS09520 | Not Available | Negative | 1797863 - 1798309 | 16546.0 |
| class i sam-dependent methyltransferase | BJD13_RS09525 | Not Available | Positive | 1798383 - 1798985 | 22647.8 |
| polyhydroxyalkanoate depolymerase | BJD13_RS09530 | Not Available | Positive | 1799250 - 1800593 | 50655.8 |
| sensor domain-containing protein | BJD13_RS09535 | Not Available | Negative | 1800722 - 1801639 | 33137.9 |
| padr family transcriptional regulator | BJD13_RS09540 | Not Available | Negative | 1801636 - 1801998 | 13216.7 |
| alginate export family protein | BJD13_RS09545 | Not Available | Positive | 1802306 - 1803859 | 57443.5 |
| hypothetical protein | BJD13_RS09550 | Not Available | Negative | 1804282 - 1805658 | 49196.5 |
| duf502 domain-containing protein | BJD13_RS09555 | Not Available | Positive | 1806034 - 1806708 | 24896.7 |
| queuosine precursor transporter | BJD13_RS09560 | Not Available | Positive | 1806713 - 1807489 | 28356.6 |
| duf885 domain-containing protein | BJD13_RS09565 | Not Available | Positive | 1807765 - 1809702 | 71792.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
