Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrroline-5-carboxylate reductase | BJD13_RS02015 | Not Available | Negative | 84377 - 85231 | 28940.5 |
| yggs family pyridoxal phosphate-dependent enzyme | BJD13_RS02020 | Not Available | Negative | 85275 - 85967 | 24693.7 |
| type iv pilus twitching motility protein pilt | BJD13_RS02025 | Not Available | Positive | 86386 - 87423 | 38645.6 |
| pilt/pilu family type 4a pilus atpase | BJD13_RS02030 | Not Available | Positive | 87536 - 88666 | 42016.8 |
| yitt family protein | BJD13_RS02040 | Not Available | Positive | 89170 - 89844 | 23972.7 |
| duf72 domain-containing protein | BJD13_RS02045 | Not Available | Negative | 90018 - 90944 | 34833.7 |
| dna-3-methyladenine glycosylase i | BJD13_RS02050 | Not Available | Negative | 90952 - 91524 | 21437.7 |
| yqge/algh family protein | BJD13_RS02060 | Not Available | Positive | 91801 - 92367 | 20087.6 |
| holliday junction resolvase ruvx | BJD13_RS02065 | Not Available | Positive | 92360 - 92827 | 16787.0 |
| aspartate carbamoyltransferase catalytic subunit | BJD13_RS02070 | Not Available | Positive | 92841 - 93788 | 33608.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
