Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s2 | BJD13_RS09420 | Not Available | Positive | 1774817 - 1775614 | 29267.2 |
| translation elongation factor ts | BJD13_RS09425 | Not Available | Positive | 1775784 - 1776662 | 31035.3 |
| ggdef domain-containing protein | BJD13_RS09430 | Not Available | Positive | 1776940 - 1778463 | 55971.2 |
| ump kinase | BJD13_RS09435 | Not Available | Positive | 1778570 - 1779292 | 25806.5 |
| ribosome recycling factor | BJD13_RS09440 | Not Available | Positive | 1779480 - 1780037 | 20353.5 |
| polyprenyl diphosphate synthase | BJD13_RS09445 | Not Available | Positive | 1780055 - 1780813 | 27945.2 |
| phosphatidate cytidylyltransferase | BJD13_RS09450 | Not Available | Positive | 1780810 - 1781637 | 28889.6 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | BJD13_RS09455 | Not Available | Positive | 1781640 - 1782830 | 40873.2 |
| rip metalloprotease rsep | BJD13_RS09460 | Not Available | Positive | 1782857 - 1784203 | 48416.3 |
| outer membrane protein assembly factor bama | BJD13_RS09465 | Not Available | Positive | 1784287 - 1786653 | 87693.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
